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pljm1 egfp lentivirus  (Addgene inc)


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    Structured Review

    Addgene inc pljm1 egfp lentivirus
    Pljm1 Egfp Lentivirus, supplied by Addgene inc, used in various techniques. Bioz Stars score: 96/100, based on 401 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pljm1-egfp/pLJM1-EGFP+(Plasmid+%2319319)/pm41922875-242-11-13
    Average 96 stars, based on 401 article reviews
    pljm1 egfp lentivirus - by Bioz Stars, 2026-10
    96/100 stars

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    Related Articles

    Plasmid Preparation:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Transfection:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Incubation:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Gentle:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Binding Assay:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Western Blot:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Mutagenesis:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Negative Control:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Construct:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Selection:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Two Tailed Test:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Infection:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Confocal Microscopy:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Transduction:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Quantitative Proteomics:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Expressing:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Control:

    Article Title: Large-scale phage-based screening reveals extensive pan-viral mimicry of host short linear motifs
    Article Snippet: To produce lentiviruses, pLJM1-EGFP (David Sabatini lab, Addgene plasmid #19319 ), psPAX2 (Didier Trono lab, Addgene plasmid #12260), and pMD2.G (Didier Trono lab, Addgene plasmid #12259) were used.

    Article Title: Phenotypic screens for SIRPA expression reveal RAB21 as a general regulator of macrophage surface identity.
    Article Snippet: NA Plasmid: pLCKO2:Sirpa (See Table S2 for details) This paper N/A Plasmid: pLentI-PuroR This paper N/A Plasmid: pNheI-EGFP-EcoRI-V1 This paper NA Plasmid: pEGFP-Rab21 This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83421 Plasmid: pEGFP-Rab21-Q76L (CA) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83422 Plasmid: pEGFP-Rab21-T31N (DN) This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83423 Plasmid: pEGFP-Rab21-CCSS This plasmid was a gift from Johanna Ivaska Addgene Plasmid #83424 Plasmid: pLentI-PuroR-EGFP-Rab21-WT This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-Q76L(CA) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-T31N(DN) This paper N/A Plasmid: pLentI-PuroR-EGFP-Rab21-CCSS This paper N/A Plasmid: pSNAPf vector New England Biolabs Cat#N9183S Plasmid: pCLIPf vector New England Biolabs Cat#N9215S Plasmid: Cd47-3xG4S-SNAPf-IRES-NeoR This paper NA Plasmid: Sirpa-3xG4S-CLIPf-IRES-NeoR This paper NA Pooled library: Mouse Toronto KnockOut (mTKO) CRISPR Library Lawson et al.16 Addgene Pooled Library #159393 Pooled library: Toronto KnockOut (Tko) CRISPR Library – Version 3 Mair et al.6 Addgene Pooled Library #90294 (Continued on next page) Cell Reports 44, 115921, July 22, 2025 23

    Article Title: Generation and Characterization of a CRISPR/Cas9-Mediated SNAP29 Knockout in Human Fibroblasts
    Article Snippet: Additionally, the two cell lines were seeded in 100-mm tissue culture dishes and transfected in accordance with the manufacturer’s protocol (4 μg of pLJM1-EGFP (Addgene, #19319, Watertown, MA, USA) using 15 μL of Attractene transfection reagent (Qiagen, Hilden, Germany) filled up to a total volume of 300 μL of DMEM without supplements).

    Article Title: Pervasive nuclear envelope ruptures precede ECM signaling and disease onset without activating cGAS-STING in Lamin-cardiomyopathy mice
    Article Snippet: pLJM1-EGFP , Sancak et al. , pLJM1-EGFP; Addgene plasmid #19319.

    Article Title: Connexin 37 sequestering of activated-ERK in the cytoplasm promotes p27-mediated endothelial cell cycle arrest
    Article Snippet: pLJM1-EGFP , Addgene (Sabatini Lab) , Cat#19313.

    Article Title: Monitoring the action of redox-directed cancer therapeutics using a human peroxiredoxin-2-based probe
    Article Snippet: In order to create a cell line with stable expression of the fusion construct, the fluorescent protein was constitutively expressed under control of the human cytomegalovirus (CMV) promoter with the pLJM1 lentiviral vector; the original plasmid, pLJM1-EGFP, was a gift from David Sabatini (Addgene plasmid # 19319).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Constructs and Sequences Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).

    Article Title: Proteomic Analysis of NCK1/2 Adaptors Uncovers Paralog-specific Interactions That Reveal a New Role for NCK2 in Cell Abscission During Cytokinesis
    Article Snippet: Murine NCK1 (NCBI clone NM010878.3), murine NCK2 (NCBI clone NM010879.3) and human EIF4B (NCBI clone NM001300821.2) were subcloned into pMSCVpuro (Clontech) with a N-terminal 3xFLAG tag, FLAG-BirA*-pcDNA5-FRT-TO (Thermo Fisher Scientific, Waltham, MA), pcDNA3.1 (Thermo Fisher Scientific) with a N-terminal 3xFLAG tag (Sigma-Aldrich, St. Louis, MO), or in pLJM1-EGFP (Addgene, Cambridge, MA, Sabatini lab).



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    pljm1 plasmid - by Bioz Stars, 2026-10
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